Function noLZSS::write_factors_binary_file_multiple_dna_w_rc

Function Documentation

size_t noLZSS::write_factors_binary_file_multiple_dna_w_rc(const std::string &in_path, const std::string &out_path)

Writes noLZSS factors from a DNA file with reverse complement awareness for multiple sequences to a binary output file.

This function reads DNA text from an input file, performs factorization with reverse complement for multiple sequences, and writes the resulting factors in binary format to an output file. Each factor is written as three uint64_t values (start position, length, ref).

Reads DNA text from an input file containing multiple sequences, performs factorization with reverse complement support, and writes the factors in binary format to an output file.

Note

Binary format: each factor is 24 bytes (3 × uint64_t: start, length, ref)

Note

This function overwrites the output file if it exists

Warning

Ensure sufficient disk space for the output file

Note

Binary format: each factor is written as three uint64_t values (start, length, ref)

Note

Reverse complement factors have RC_MASK set in the ref field

Warning

This function overwrites the output file if it exists

Parameters:

  • in_path – Path to input file containing DNA text with multiple sequences

  • out_path – Path to output file where binary factors will be written

  • in_path – Path to input file containing DNA text with multiple sequences

  • out_path – Path to output file where binary factors will be written

Returns:

Number of factors written to the output file

Returns:

Number of factors written to the output file