File factorizer.cpp

↰ Parent directory (src/cpp)

Definition (src/cpp/factorizer.cpp)

• Program Listing for File factorizer.cpp

Includes

• cassert

• factorizer.hpp (File factorizer.hpp)

• factorizer_core.hpp (File factorizer_core.hpp)

• factorizer_helpers.hpp (File factorizer_helpers.hpp)

• fstream

• iostream

• limits

• optional

• parallel_factorizer.hpp (File parallel_factorizer.hpp)

• sdsl/rmq_succinct_sct.hpp

• sdsl/suffix_trees.hpp

Namespaces

• Namespace noLZSS

Functions

• Function noLZSS::complement

• Function noLZSS::count_factors

• Function noLZSS::count_factors_dna_w_rc

• Function noLZSS::count_factors_file

• Function noLZSS::count_factors_file_dna_w_rc

• Function noLZSS::count_factors_file_multiple_dna_w_rc

• Function noLZSS::count_factors_multiple_dna_w_rc

• Function noLZSS::factorize

• Function noLZSS::factorize_dna_w_rc

• Function noLZSS::factorize_dna_w_reference_seq

• Function noLZSS::factorize_dna_w_reference_seq_file

• Function noLZSS::factorize_file

• Function noLZSS::factorize_file_dna_w_rc

• Function noLZSS::factorize_file_multiple_dna_w_rc

• Template Function noLZSS::factorize_file_stream

• Template Function noLZSS::factorize_file_stream_dna_w_rc

• Function noLZSS::factorize_multiple_dna_w_rc

• Template Function noLZSS::factorize_stream_dna_w_rc

• Function noLZSS::factorize_w_reference

• Function noLZSS::factorize_w_reference_file

• Function noLZSS::parallel_factorize_dna_w_rc_to_file(::std::string_view, const ::std::string&, size_t)

• Function noLZSS::parallel_factorize_file_dna_w_rc_to_file(const ::std::string&, const ::std::string&, size_t)

• Function noLZSS::parallel_factorize_file_to_file(const ::std::string&, const ::std::string&, size_t, size_t)

• Function noLZSS::parallel_factorize_to_file(::std::string_view, const ::std::string&, size_t, size_t)

• Function noLZSS::prepare_multiple_dna_sequences_no_rc

• Function noLZSS::prepare_multiple_dna_sequences_w_rc

• Function noLZSS::revcomp

• Function noLZSS::write_factors_binary_file

• Function noLZSS::write_factors_binary_file_dna_w_rc

• Function noLZSS::write_factors_binary_file_multiple_dna_w_rc