Template Function noLZSS::factorize_file_stream_dna_w_rc

• Defined in File factorizer.cpp

Function Documentation

template<class Sink>
size_t noLZSS::factorize_file_stream_dna_w_rc(const std::string &path, Sink &&sink)

Factorizes DNA text from a file with reverse complement awareness using the noLZSS algorithm.

Advanced factorization function for DNA files with reverse complement awareness.

This template function reads DNA text directly from a file and performs factorization without loading the entire file into memory, considering both forward and reverse complement matches. This is more memory-efficient for large files.

This template function reads DNA text from a file and provides low-level access to the factorization process through a sink callable.

See also

factorize_file_dna_w_rc() for the non-template version that returns a vector

Note

This function builds the suffix tree directly from the file

Template Parameters:

• Sink – Callable type that accepts Factor objects

• Sink – Callable type that accepts Factor objects

Parameters:

• path – Path to input file containing DNA text

• sink – Callable that receives each computed factor

• path – Path to input file containing DNA text

• sink – Callable that receives each computed factor

Returns:

Number of factors emitted

Returns:

Number of factors emitted