File fasta_processor.cpp

↰ Parent directory (src/cpp)

Definition (src/cpp/fasta_processor.cpp)

• Program Listing for File fasta_processor.cpp

Includes

• algorithm

• factorizer.hpp (File factorizer.hpp)

• factorizer_core.hpp (File factorizer_core.hpp)

• factorizer_helpers.hpp (File factorizer_helpers.hpp)

• fasta_processor.hpp (File fasta_processor.hpp)

• fstream

• iostream

• parallel_fasta_processor.hpp (File parallel_fasta_processor.hpp)

• sdsl/construct.hpp

• sdsl/rmq_succinct_sct.hpp

• set

Namespaces

• Namespace noLZSS

Functions

• Function noLZSS::count_factors_fasta_dna_no_rc_per_sequence

• Function noLZSS::count_factors_fasta_dna_w_rc_per_sequence

• Function noLZSS::factorize_dna_rc_w_ref_fasta_files

• Function noLZSS::factorize_fasta_dna_no_rc_per_sequence

• Function noLZSS::factorize_fasta_dna_w_rc_per_sequence

• Function noLZSS::factorize_fasta_multiple_dna_no_rc

• Function noLZSS::factorize_fasta_multiple_dna_w_rc

• Function noLZSS::identify_sentinel_factors

• Function noLZSS::is_canonical_dna

• Function noLZSS::parse_fasta_sequences_and_ids

• Function noLZSS::prepare_ref_target_dna_no_rc_from_fasta

• Function noLZSS::prepare_ref_target_dna_w_rc_from_fasta

• Function noLZSS::to_upper_ascii

• Function noLZSS::write_factors_binary_file_fasta_dna_no_rc_per_sequence

• Function noLZSS::write_factors_binary_file_fasta_dna_w_rc_per_sequence

• Function noLZSS::write_factors_binary_file_fasta_multiple_dna_no_rc

• Function noLZSS::write_factors_binary_file_fasta_multiple_dna_w_rc

• Function noLZSS::write_factors_dna_w_reference_fasta_files_to_binary