Namespace noLZSS

Classes

• Struct Factor

• Struct FactorFileHeader

• Struct FastaFactorizationResult

• Struct FastaParseResult

• Struct FastaProcessResult

• Struct PreparedSequenceResult

Functions

• Function noLZSS::complement

• Function noLZSS::count_factors

• Function noLZSS::count_factors_dna_w_rc

• Function noLZSS::count_factors_file

• Function noLZSS::count_factors_file_dna_w_rc

• Function noLZSS::count_factors_file_multiple_dna_w_rc

• Function noLZSS::count_factors_multiple_dna_w_rc

• Function noLZSS::factorize

• Function noLZSS::factorize_dna_w_rc

• Function noLZSS::factorize_fasta_multiple_dna_no_rc

• Function noLZSS::factorize_fasta_multiple_dna_w_rc

• Function noLZSS::factorize_file

• Function noLZSS::factorize_file_dna_w_rc

• Function noLZSS::factorize_file_multiple_dna_w_rc

• Template Function noLZSS::factorize_file_stream

• Template Function noLZSS::factorize_file_stream_dna_w_rc

• Template Function noLZSS::factorize_file_stream_multiple_dna_w_rc

• Function noLZSS::factorize_multiple_dna_w_rc

• Template Function noLZSS::factorize_stream

• Template Function noLZSS::factorize_stream_dna_w_rc

• Template Function noLZSS::factorize_stream_multiple_dna_w_rc

• Function noLZSS::identify_sentinel_factors

• Function noLZSS::is_rc

• Function noLZSS::lcp

• Function noLZSS::next_leaf

• Template Function noLZSS::nolzss

• Template Function noLZSS::nolzss_dna_w_rc

• Template Function noLZSS::nolzss_multiple_dna_w_rc

• Function noLZSS::parse_fasta_sequences

• Function noLZSS::parse_fasta_sequences_and_ids

• Function noLZSS::prepare_multiple_dna_sequences_no_rc

• Function noLZSS::prepare_multiple_dna_sequences_w_rc

• Function noLZSS::process_amino_acid_fasta

• Function noLZSS::process_nucleotide_fasta

• Function noLZSS::rc_end

• Function noLZSS::revcomp

• Function noLZSS::write_factors_binary_file

• Function noLZSS::write_factors_binary_file_dna_w_rc

• Function noLZSS::write_factors_binary_file_fasta_multiple_dna_no_rc

• Function noLZSS::write_factors_binary_file_fasta_multiple_dna_w_rc

• Function noLZSS::write_factors_binary_file_multiple_dna_w_rc

Typedefs

• Typedef noLZSS::cst_t

Variables

• Variable noLZSS::RC_MASK

• Variable noLZSS::VERSION_MAJOR

• Variable noLZSS::VERSION_MINOR

• Variable noLZSS::VERSION_PATCH