File bindings.cpp

↰ Parent directory (src/cpp)

Python bindings for the Namespace noLZSS factorization library.

Definition (src/cpp/bindings.cpp)

• Program Listing for File bindings.cpp

Detailed Description

This file contains the Python bindings for the non-overlapping Lempel-Ziv-Storer-Szymanski factorization algorithm. The bindings provide both in-memory and file-based factorization capabilities with proper GIL management for performance.

The module exposes the following functions:

• factorize(): Factorize in-memory text

• factorize_file(): Factorize text from file

• count_factors(): Count factors in text

• count_factors_file(): Count factors in file

• write_factors_binary_file(): Write factors to binary file

Includes

• factorizer.hpp (File factorizer.hpp)

• fasta_processor.hpp (File fasta_processor.hpp)

• parallel_fasta_processor.hpp (File parallel_fasta_processor.hpp)

• pybind11/pybind11.h

• pybind11/pytypes.h

• pybind11/stl.h

• stdexcept

• string

• string_view

Functions

• Function parse_fasta_sanitization_mode

• Function PYBIND11_MODULE